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GrainGenes Marker Report: k07464

Locus	k07464
Type	SNP
Chromosome	1H
Map	Hv-HNxH602-1H 116.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baet38B1004
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = G/A SNP structure (UNICODE) = ACCGAGACCCRACTCCACGGA Parent 1 SNP sequence = ACCGAGACCCGACTCCACGGA Parent 2 SNP sequence = ACCGAGACCCAACTCCACGGA SNP = A/G SNP structure (UNICODE) = ATTTTCCCACRCAGCCCTTTT Parent 1 SNP sequence = ATTTTCCCACACAGCCCTTTT Parent 2 SNP sequence = ATTTTCCCACGCAGCCCTTTT
Probe for Locus	baet38B1004
Locus	k07464
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = beta-expansin EXPB4 [Oryza sativa (japonica cultivar-group)] gb AAK55466.1 beta-expansin (EXPB4) [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GCTACATCCGAGGAGAGTGC Right 5' - ACGAACAGTACCCGCAGAGT
Sequence	BI958420
PCR size	258