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GrainGenes Marker Report: k07554

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Locus	k07554
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 81.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS16B17
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = G/A SNP structure (UNICODE) = TCTTGTCGAGRCCTGATGTGT Parent 1 SNP sequence = TCTTGTCGAGGCCTGATGTGT Parent 2 SNP sequence = TCTTGTCGAGACCTGATGTGT SNP = A/T SNP structure (UNICODE) = CTTGATGATGWTATAAGGGCC Parent 1 SNP sequence = CTTGATGATGATATAAGGGCC Parent 2 SNP sequence = CTTGATGATGTTATAAGGGCC
Probe for Locus	BaGS16B17
Locus	k07554
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = Similar to Zea mays mRNA for pyruvate decarboxylase (X17555) [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CGTGCGATAACTGAGATGGA Right 5' - CCAGTGCTAAAAGAGGCAGC
Sequence	AV920921
PCR size	395