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GrainGenes Marker Report: k07578

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Locus
k07578
Type
SNP
Chromosome
5H
Map
Hv-HNxH602-5H68.5
[ Show Nearby Loci ]
Map Data
Barley, HN x H602, Sato2009
Species
Hordeum vulgare
Hordeum vulgare subsp. spontaneum
Probe
BaGS23N21
Reference
ReferenceSato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark
[ Hide all but 1 of 24 ]
SNP = T/A
SNP structure (UNICODE) = GAAATATATAWAGAACAGAGG
Parent 1 SNP sequence = GAAATATATATAGAACAGAGG
Parent 2 SNP sequence = GAAATATATAAAGAACAGAGG
SNP = C/T
SNP structure (UNICODE) = TCCAAACAGTYCGATGCCAAA
Parent 1 SNP sequence = TCCAAACAGTCCGATGCCAAA
Parent 2 SNP sequence = TCCAAACAGTTCGATGCCAAA
SNP = T/G
SNP structure (UNICODE) = CTTCAGAGCAKCAATGCCTCT
Parent 1 SNP sequence = CTTCAGAGCATCAATGCCTCT
Parent 2 SNP sequence = CTTCAGAGCAGCAATGCCTCT
SNP = A/G
SNP structure (UNICODE) = GCTCCCAACARTTCTAAATTC
Parent 1 SNP sequence = GCTCCCAACAATTCTAAATTC
Parent 2 SNP sequence = GCTCCCAACAGTTCTAAATTC
SNP = T/C
SNP structure (UNICODE) = TATAAGTCTTYTAAGAGATTC
Parent 1 SNP sequence = TATAAGTCTTTTAAGAGATTC
Parent 2 SNP sequence = TATAAGTCTTCTAAGAGATTC
SNP = G/A
SNP structure (UNICODE) = TCTCTTAGTARAATCTCTAGA
Parent 1 SNP sequence = TCTCTTAGTAGAATCTCTAGA
Parent 2 SNP sequence = TCTCTTAGTAAAATCTCTAGA


Probe for Locus
BaGS23N21
Locus
k07578
Reference
ReferenceSato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks
Best BLAST Hit = putative calcineurin B-like protein [Oryza sativa] gb AAR01663.1 calcineurin B protein [Oryza sativa (japonica cultivar-group)]
Type
PCR
PCR primers
Left 5' - AAAAGATTGTCCGAGCACCA
Right 5' - AAACTCGACGATTTCATCCG
Sequence
AV921566
PCR size
395