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GrainGenes Marker Report: k07582

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Locus	k07582
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 42.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS19F16
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 19 ] SNP = A/G SNP structure (UNICODE) = AAAATCATACRGATCCATTCT Parent 1 SNP sequence = AAAATCATACAGATCCATTCT Parent 2 SNP sequence = AAAATCATACGGATCCATTCT SNP = A/C SNP structure (UNICODE) = AGGCCCACACMGTAACGTCGG Parent 1 SNP sequence = AGGCCCACACAGTAACGTCGG Parent 2 SNP sequence = AGGCCCACACCGTAACGTCGG SNP structure (UNICODE) = AACATTTCAARAATTCTAAAT Parent 1 SNP sequence = AACATTTCAAAAATTCTAAAT Parent 2 SNP sequence = AACATTTCAAGAATTCTAAAT SNP = C/T SNP structure (UNICODE) = ATTCTAAATTYTGTGGTAGAA Parent 1 SNP sequence = ATTCTAAATTCTGTGGTAGAA Parent 2 SNP sequence = ATTCTAAATTTTGTGGTAGAA SNP = T/C SNP structure (UNICODE) = GAGATATCTGYGGAACAACAA Parent 1 SNP sequence = GAGATATCTGTGGAACAACAA Parent 2 SNP sequence = GAGATATCTGCGGAACAACAA
Probe for Locus	BaGS19F16
Locus	k07582
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative AFG1-like ATPase [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - ATAATGCAATGTCGCCATCA Right 5' - AGTGAACGAAGCGACAGGTT
Sequence	AV921999
PCR size	400