GrainGenes Marker Report: k07598
Locus
k07598
Type
CAPS
Chromosome
7H
Map
Hv-HNxH602-7H 147.2
[ Show Nearby Loci ]
Map Data
Barley, HN x H602, Sato2009
Species
Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe
BaGS38F01
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark
[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = MseI SNP = T/C SNP structure (UNICODE) = TGAGACATCTYAAACCTTCAC Parent 1 SNP sequence = TGAGACATCTTAAACCTTCAC Parent 2 SNP sequence = TGAGACATCTCAAACCTTCAC Recognized sequence for CAPs locus = TTAA
Probe for Locus
BaGS38F01
Locus
k07598
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks
Best BLAST Hit = OSJNBa0032F06.25 [Oryza sativa (japonica cultivar-group)]
Type
PCR
PCR primers
Left 5' - TAAACGTCCACACGTTCTGC
Right 5' - GCTGTACAGGAGCGCTAAGG
Sequence
BJ468340
PCR size
389
GrainGenes Marker Report: k07598
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