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GrainGenes Marker Report: k07631

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Locus	k07631
Type	CAPS
Chromosome	5H
Map	Hv-HNxH602-5H 5.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS11K08
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 10 ] Restriction enzyme used for CAPS analysis = TspRI SNP = C/T SNP structure (UNICODE) = CCTTGAATCAYTGAATTTCCT Parent 1 SNP sequence = CCTTGAATCACTGAATTTCCT Parent 2 SNP sequence = CCTTGAATCATTGAATTTCCT Recognized sequence for CAPs locus = CASTGNN SNP = G/A SNP structure (UNICODE) = TACTCCTACARTGCTGCCAAG Parent 1 SNP sequence = TACTCCTACAGTGCTGCCAAG Parent 2 SNP sequence = TACTCCTACAATGCTGCCAAG
Probe for Locus	BaGS11K08
Locus	k07631
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = expressed protein [Arabidopsis thaliana] gb AAO00853.1 putative protein [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - CACAACTCCCTTGTCTCCGT Right 5' - GGACCTGTTGCACATGACAC
Sequence	AV833933
PCR size	402