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GrainGenes Marker Report: k07637

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Locus	k07637
Type	CAPS
Chromosome	5H
Map	Hv-HNxH602-5H 40.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS16G24
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = AvaII SNP = C/A SNP structure (UNICODE) = GATGATGGACMCCCGGGCGGT Parent 1 SNP sequence = GATGATGGACCCCCGGGCGGT Parent 2 SNP sequence = GATGATGGACACCCGGGCGGT Recognized sequence for CAPs locus = GGWCC
Probe for Locus	BaGS16G24
Locus	k07637
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative T7N9 14 protein [Sorghum bicolor]
Type	PCR
PCR primers	Left 5' - GAGACTATGCGCAACCAATG Right 5' - TGACGAGAAGCAGAAGCTGA
Sequence	AV920993
PCR size	362