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GrainGenes Marker Report: k07639

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Locus	k07639
Type	SNP
Chromosome	1H
Map	Hv-HNxH602-1H 288.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS17I22
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = A/C SNP structure (UNICODE) = AAACAAGTGCMGACCATGGCC Parent 1 SNP sequence = AAACAAGTGCAGACCATGGCC Parent 2 SNP sequence = AAACAAGTGCCGACCATGGCC SNP = A/G SNP structure (UNICODE) = GCATGTACTCRTTGGAGGAAC Parent 1 SNP sequence = GCATGTACTCATTGGAGGAAC Parent 2 SNP sequence = GCATGTACTCGTTGGAGGAAC SNP = A/T SNP structure (UNICODE) = CTCAACATCAWACATACTGCT Parent 1 SNP sequence = CTCAACATCAAACATACTGCT Parent 2 SNP sequence = CTCAACATCATACATACTGCT
Probe for Locus	BaGS17I22
Locus	k07639
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = Strong similarity to gb X95263 Periodic tryptophan protein 2 gene (PWP2) from Homo sapiens and contains 6 WD40, G-beta
Type	PCR
PCR primers	Left 5' - AGACAAAGTTCATCAGGGCG Right 5' - CTCGCCGTAGGTCTTGATGT
Sequence	AV833954
PCR size	363