Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k07641

[Submit comment/correction]

Locus	k07641
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 75.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS22F15
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 19 ] SNP = T/C SNP structure (UNICODE) = CTCCGTACTTYGCAACAAGTT Parent 1 SNP sequence = CTCCGTACTTTGCAACAAGTT Parent 2 SNP sequence = CTCCGTACTTCGCAACAAGTT SNP = A/G SNP structure (UNICODE) = AGAGGAGTTCRCACTGGTAAT Parent 1 SNP sequence = AGAGGAGTTCACACTGGTAAT Parent 2 SNP sequence = AGAGGAGTTCGCACTGGTAAT SNP = G/A SNP structure (UNICODE) = ACTTTGAGCCRGAAGATTTCG Parent 1 SNP sequence = ACTTTGAGCCGGAAGATTTCG Parent 2 SNP sequence = ACTTTGAGCCAGAAGATTTCG SNP = G/T SNP structure (UNICODE) = TGAATACGAAKGGTGAGATCC Parent 1 SNP sequence = TGAATACGAAGGGTGAGATCC Parent 2 SNP sequence = TGAATACGAATGGTGAGATCC SNP structure (UNICODE) = CACATAGACAKTCTCTTAGAA Parent 1 SNP sequence = CACATAGACAGTCTCTTAGAA Parent 2 SNP sequence = CACATAGACATTCTCTTAGAA
Probe for Locus	BaGS22F15
Locus	k07641
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = P0672D08.29 [Oryza sativa (japonica cultivar-group)] dbj BAB62640.1 contains ESTs
Type	PCR
PCR primers	Left 5' - ACAGTACGCTCATTGTGGCA Right 5' - GCGTCCTCATCTACCAGAGC
Sequence	AV918812
PCR size	364