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GrainGenes Marker Report: k07644

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Locus	k07644
Type	SNP
Chromosome	6H
Map	Hv-HNxH602-6H 120
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS19N01
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 11 ] SNP = C/G SNP structure (UNICODE) = GCAAAATTCASGATTTTAAGA Parent 1 SNP sequence = GCAAAATTCACGATTTTAAGA Parent 2 SNP sequence = GCAAAATTCAGGATTTTAAGA SNP structure (UNICODE) = AAGAGAAAAASATTACAAGCT Parent 1 SNP sequence = AAGAGAAAAACATTACAAGCT Parent 2 SNP sequence = AAGAGAAAAAGATTACAAGCT SNP = A/C SNP structure (UNICODE) = CGTAGTACAAMAGTATCAAGA Parent 1 SNP sequence = CGTAGTACAAAAGTATCAAGA Parent 2 SNP sequence = CGTAGTACAACAGTATCAAGA
Probe for Locus	BaGS19N01
Locus	k07644
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative transmembrane 9 superfamily protein member 2 precursor [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - ATGGAACTGGACTACGGTGG Right 5' - CTAAAACGGACTCCGAGCAG
Sequence	AV834544
PCR size	367