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GrainGenes Marker Report: k07645

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Locus	k07645
Type	CAPS
Chromosome	5H
Map	Hv-HNxH602-5H 147.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS22H13
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = AfaI SNP = C/G SNP structure (UNICODE) = CCTGGCTATASTACTCATCTT Parent 1 SNP sequence = CCTGGCTATACTACTCATCTT Parent 2 SNP sequence = CCTGGCTATAGTACTCATCTT Recognized sequence for CAPs locus = GTAC
Probe for Locus	BaGS22H13
Locus	k07645
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OTU-like cysteine protease family protein [Arabidopsis thaliana] ref NP_850716.1 OTU-like cysteine protease family protein [Arabidopsis tha
Type	PCR
PCR primers	Left 5' - GGAGTTACAATCACTCGGCG Right 5' - TAGACGTGCTGTGAGCTTCG
Sequence	AV918846
PCR size	360