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GrainGenes Marker Report: k07650

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Locus	k07650
Type	CAPS
Chromosome	5H
Map	Hv-HNxH602-5H 80.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS38J23
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = TaqI SNP = G/A SNP structure (UNICODE) = GAGCGCGCTCRATATGCTTAG Parent 1 SNP sequence = GAGCGCGCTCGATATGCTTAG Parent 2 SNP sequence = GAGCGCGCTCAATATGCTTAG Recognized sequence for CAPs locus = TCGA
Probe for Locus	BaGS38J23
Locus	k07650
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = 4-nitrophenylphosphatase-like protein [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - CGGAGCCAAGAGTTTTTGAG Right 5' - CCGAGACCGTGAGAAAAGAG
Sequence	BJ468396
PCR size	362