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GrainGenes Marker Report: k07669

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Locus	k07669
Type	CAPS
Chromosome	5H
Map	Hv-HNxH602-5H 230.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS30L20
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = AvaI SNP = C/T SNP structure (UNICODE) = ATACAAGACCYGAGATAAACC Parent 1 SNP sequence = ATACAAGACCCGAGATAAACC Parent 2 SNP sequence = ATACAAGACCTGAGATAAACC Recognized sequence for CAPs locus = CYCGRG
Probe for Locus	BaGS30L20
Locus	k07669
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = lysyl-tRNA synthetase [Nicotiana tabacum]
Type	PCR
PCR primers	Left 5' - CAAACAAATTCGGCAGGTG Right 5' - TCAGTTGAGAAAGAAGCGCA
Sequence	BJ550076
PCR size	360