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GrainGenes Marker Report: k07684

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Locus	k07684
Type	SNP
Chromosome	6H
Map	Hv-HNxH602-6H 62.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS9A04
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 18 ] SNP = G/A SNP structure (UNICODE) = GCCCTTCCTTRTGGCCCATCC Parent 1 SNP sequence = GCCCTTCCTTGTGGCCCATCC Parent 2 SNP sequence = GCCCTTCCTTATGGCCCATCC SNP = C/T SNP structure (UNICODE) = AGTTCCTGTTYGTCGTTGATA Parent 1 SNP sequence = AGTTCCTGTTCGTCGTTGATA Parent 2 SNP sequence = AGTTCCTGTTTGTCGTTGATA SNP = T/G SNP structure (UNICODE) = TCCCCAATCAKAAGGATGTGG Parent 1 SNP sequence = TCCCCAATCATAAGGATGTGG Parent 2 SNP sequence = TCCCCAATCAGAAGGATGTGG SNP structure (UNICODE) = TCGCTCCTCTRAACTAGCAAC Parent 1 SNP sequence = TCGCTCCTCTGAACTAGCAAC Parent 2 SNP sequence = TCGCTCCTCTAAACTAGCAAC SNP structure (UNICODE) = CTGCTAAGCAKCAACAAATAA Parent 1 SNP sequence = CTGCTAAGCATCAACAAATAA Parent 2 SNP sequence = CTGCTAAGCAGCAACAAATAA
Probe for Locus	BaGS9A04
Locus	k07684
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = aconitase family protein / aconitate hydratase family protein [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - TCATCCAGAAAAGAGCACCA Right 5' - AGTACGTCTCCCTCCACGTC
Sequence	BJ546324
PCR size	361