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GrainGenes Marker Report: k07693

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Locus	k07693
Type	SNP
Chromosome	1H
Map	Hv-HNxH602-1H 188.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS31N17
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 22 ] SNP = C/T SNP structure (UNICODE) = TAAACACAGAYGCAGCTTAGC Parent 1 SNP sequence = TAAACACAGACGCAGCTTAGC Parent 2 SNP sequence = TAAACACAGATGCAGCTTAGC SNP = C/A SNP structure (UNICODE) = CATGCTGATCMATACTGCTCT Parent 1 SNP sequence = CATGCTGATCCATACTGCTCT Parent 2 SNP sequence = CATGCTGATCAATACTGCTCT SNP structure (UNICODE) = TTGCCAGTAAYTACAGCAGTT Parent 1 SNP sequence = TTGCCAGTAACTACAGCAGTT Parent 2 SNP sequence = TTGCCAGTAATTACAGCAGTT SNP = T/C SNP structure (UNICODE) = TACTTTGAGAYGCAGAAAGCA Parent 1 SNP sequence = TACTTTGAGATGCAGAAAGCA Parent 2 SNP sequence = TACTTTGAGACGCAGAAAGCA SNP = G/T SNP structure (UNICODE) = ATGAACATACKAAAATCTAAC Parent 1 SNP sequence = ATGAACATACGAAAATCTAAC Parent 2 SNP sequence = ATGAACATACTAAAATCTAAC SNP structure (UNICODE) = ACAAGTAGAGMCAAAAGGTGA Parent 1 SNP sequence = ACAAGTAGAGCCAAAAGGTGA Parent 2 SNP sequence = ACAAGTAGAGACAAAAGGTGA
Probe for Locus	BaGS31N17
Locus	k07693
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = SET domain protein 105 [Zea mays]
Type	PCR
PCR primers	Left 5' - AGCAATGGATTCCAAACAGG Right 5' - AAGAAAGTGGTTGCAGGTGG
Sequence	BJ466380
PCR size	360