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GrainGenes Marker Report: k07696

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Locus	k07696
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 26.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS9H22
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 23 ] SNP = T/A SNP structure (UNICODE) = TCAAGTCTGGWACCACTCTAT Parent 1 SNP sequence = TCAAGTCTGGTACCACTCTAT Parent 2 SNP sequence = TCAAGTCTGGAACCACTCTAT SNP = G/A SNP structure (UNICODE) = ATGCAGCACARACAACACGTT Parent 1 SNP sequence = ATGCAGCACAGACAACACGTT Parent 2 SNP sequence = ATGCAGCACAAACAACACGTT SNP = C/A SNP structure (UNICODE) = GTACAACTCAMGAGCTCTTGT Parent 1 SNP sequence = GTACAACTCACGAGCTCTTGT Parent 2 SNP sequence = GTACAACTCAAGAGCTCTTGT SNP = A/C SNP structure (UNICODE) = GAGCTCTTGTMGACGGTTTTC Parent 1 SNP sequence = GAGCTCTTGTAGACGGTTTTC Parent 2 SNP sequence = GAGCTCTTGTCGACGGTTTTC SNP structure (UNICODE) = CGTTCCAAATRCGTGGTCCCA Parent 1 SNP sequence = CGTTCCAAATGCGTGGTCCCA Parent 2 SNP sequence = CGTTCCAAATACGTGGTCCCA SNP = C/T SNP structure (UNICODE) = ATATCTGGCAYTGCAAGGTGG Parent 1 SNP sequence = ATATCTGGCACTGCAAGGTGG Parent 2 SNP sequence = ATATCTGGCATTGCAAGGTGG
Probe for Locus	BaGS9H22
Locus	k07696
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative fatty acid hydroxylase [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - AATGACAAAACGACCTTGGC Right 5' - GAGTTGCTGCAAGAACACGA
Sequence	AV920153
PCR size	361