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GrainGenes Marker Report: k07697

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Locus	k07697
Type	CAPS
Chromosome	5H
Map	Hv-HNxH602-5H 206.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS30F06
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = TaqI SNP = T/C SNP structure (UNICODE) = CATCGGTGTTYGACTTACCAT Parent 1 SNP sequence = CATCGGTGTTTGACTTACCAT Parent 2 SNP sequence = CATCGGTGTTCGACTTACCAT Recognized sequence for CAPs locus = TCGA
Probe for Locus	BaGS30F06
Locus	k07697
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = casein kinase II alpha subunit [Oryza sativa (indica cultivar-group)] dbj BAB21591.1 casein kinase II alpha subunit [Oryza sativa (indica c
Type	PCR
PCR primers	Left 5' - TGTTGGGTTAACAACGATGG Right 5' - CCTCATCATCTGCACTGTCG
Sequence	BJ467921
PCR size	362