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GrainGenes Marker Report: k07701

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Locus	k07701
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 192.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS36A04
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = DraI SNP = G/T SNP structure (UNICODE) = GTTCAGTCTTKAAATGCCCGA Parent 1 SNP sequence = GTTCAGTCTTGAAATGCCCGA Parent 2 SNP sequence = GTTCAGTCTTTAAATGCCCGA Recognized sequence for CAPs locus = TTTAAA
Probe for Locus	BaGS36A04
Locus	k07701
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBa0070C17.21 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TGTGCAACAGTGGTGATCCT Right 5' - CAGCGATTATGACCCTCGAT
Sequence	BJ467101
PCR size	364