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GrainGenes Marker Report: k07706

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Locus	k07706
Type	CAPS
Chromosome	1H
Map	Hv-HNxH602-1H 126.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS17A18
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = BstUI SNP = A/G SNP structure (UNICODE) = GGGGGTTGTCRCGGCTTTGGT Parent 1 SNP sequence = GGGGGTTGTCACGGCTTTGGT Parent 2 SNP sequence = GGGGGTTGTCGCGGCTTTGGT Recognized sequence for CAPs locus = CGCG
Probe for Locus	BaGS17A18
Locus	k07706
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = atranbp1b [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - AACATGCATGGTGACAAGGA Right 5' - AAGGGCTTCGTCAATGTTTG
Sequence	AV917910
PCR size	361