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GrainGenes Marker Report: k07707

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Locus	k07707
Type	CAPS
Chromosome	6H
Map	Hv-HNxH602-6H 158.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS37E09
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HhaI SNP = T/G SNP structure (UNICODE) = GGGCAGAGTCKCGCCAGTAGC Parent 1 SNP sequence = GGGCAGAGTCTCGCCAGTAGC Parent 2 SNP sequence = GGGCAGAGTCGCGCCAGTAGC Recognized sequence for CAPs locus = GCGC
Probe for Locus	BaGS37E09
Locus	k07707
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = 26S protease regulatory subunit 7 (26S proteasome subunit 7) (26S proteasome AAA-ATPase subunit RPT1) (Regulatory particle
Type	PCR
PCR primers	Left 5' - CGTGGTTTTATTGCCTGCTT Right 5' - CAATGACCAACCAACTGTGC
Sequence	CA013398
PCR size	361