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GrainGenes Marker Report: k07713

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Locus	k07713
Type	CAPS
Chromosome	6H
Map	Hv-HNxH602-6H 194
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS9K15
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = MvaI SNP = C/G SNP structure (UNICODE) = GAAACTTCCASGGAAGGACTG Parent 1 SNP sequence = GAAACTTCCACGGAAGGACTG Parent 2 SNP sequence = GAAACTTCCAGGGAAGGACTG Recognized sequence for CAPs locus = CCWGG
Probe for Locus	BaGS9K15
Locus	k07713
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = SAP-like protein [Oryza sativa] emb CAC86223.1 SAP-like protein [Oryza sativa]
Type	PCR
PCR primers	Left 5' - TCTTTCAAGGAGCAGCGATT Right 5' - TAAATCAGCACACCCACCAA
Sequence	AV920190
PCR size	364