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GrainGenes Marker Report: k07728

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Locus	k07728
Type	SNP
Chromosome	4H
Map	Hv-HNxH602-4H 112.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS35C13
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 19 ] SNP = A/T SNP structure (UNICODE) = AACAAAAGAAWCATGTATTGT Parent 1 SNP sequence = AACAAAAGAAACATGTATTGT Parent 2 SNP sequence = AACAAAAGAATCATGTATTGT SNP = G/A SNP structure (UNICODE) = AATGTCTTTCRAACATTGCTA Parent 1 SNP sequence = AATGTCTTTCGAACATTGCTA Parent 2 SNP sequence = AATGTCTTTCAAACATTGCTA SNP = G/C SNP structure (UNICODE) = GCCCACCTCASGCATCTTGAT Parent 1 SNP sequence = GCCCACCTCAGGCATCTTGAT Parent 2 SNP sequence = GCCCACCTCACGCATCTTGAT SNP = A/G SNP structure (UNICODE) = TGAATCAGTARAAGAACATTC Parent 1 SNP sequence = TGAATCAGTAAAAGAACATTC Parent 2 SNP sequence = TGAATCAGTAGAAGAACATTC SNP structure (UNICODE) = AATATCTGGCRAATATGCTTG Parent 1 SNP sequence = AATATCTGGCAAATATGCTTG Parent 2 SNP sequence = AATATCTGGCGAATATGCTTG
Probe for Locus	BaGS35C13
Locus	k07728
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = Putative heat shock factor 3 [Oryza sativa (japonica cultivar-group)] gb AAN52741.1 Putative heat shock factor 3 [Oryza sativa (japonica cu
Type	PCR
PCR primers	Left 5' - ACGGCATGCATTAAACAACA Right 5' - GCTGAAGCTGTGGTATGGGT
Sequence	BJ466946
PCR size	367