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GrainGenes Marker Report: k07732

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Locus	k07732
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 80.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS20M01
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = EcoRV SNP = G/C SNP structure (UNICODE) = CATCAGATATSGAATGATGCA Parent 1 SNP sequence = CATCAGATATGGAATGATGCA Parent 2 SNP sequence = CATCAGATATCGAATGATGCA Recognized sequence for CAPs locus = GATATC
Probe for Locus	BaGS20M01
Locus	k07732
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative ATP-dependent proteinase LON2 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CTTGCAACTGTAGCCTGCAT Right 5' - TGAGCTCCACCTGATGAAAA
Sequence	AV834004
PCR size	350