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GrainGenes Marker Report: k07780

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Locus	k07780
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 292.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS25O15
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = G/A SNP structure (UNICODE) = TGCAATAGCTRAAATTGTGAC Parent 1 SNP sequence = TGCAATAGCTGAAATTGTGAC Parent 2 SNP sequence = TGCAATAGCTAAAATTGTGAC SNP = C/T SNP structure (UNICODE) = ATGGGTTGGTYGGGATGCTCG Parent 1 SNP sequence = ATGGGTTGGTCGGGATGCTCG Parent 2 SNP sequence = ATGGGTTGGTTGGGATGCTCG
Probe for Locus	BaGS25O15
Locus	k07780
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = C13 endopeptidase NP1 precursor [Zea mays]
Type	PCR
PCR primers	Left 5' - GCTGGCGATTGGTTGTTATT Right 5' - AGTACCACCTGCTGTCCCTG
Sequence	BJ467583
PCR size	350