Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k07810

[Submit comment/correction]

Locus	k07810
Type	CAPS
Chromosome	1H
Map	Hv-HNxH602-1H 76.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS11J13
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HapII SNP = G/C SNP structure (UNICODE) = GCACGACACCSGCGTCCTTGC Parent 1 SNP sequence = GCACGACACCGGCGTCCTTGC Parent 2 SNP sequence = GCACGACACCCGCGTCCTTGC Recognized sequence for CAPs locus = CCGG
Probe for Locus	BaGS11J13
Locus	k07810
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative potasium transporter [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TCTTCCAGCAAATGTTCAGGT Right 5' - TCGAGGAAGAAGATGGATGC
Sequence	AV833930
PCR size	353