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GrainGenes Marker Report: k07811

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Locus	k07811
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 155.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS22K12
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 11 ] SNP = C/A SNP structure (UNICODE) = CACTTTGGACMCTAAATGCCC Parent 1 SNP sequence = CACTTTGGACCCTAAATGCCC Parent 2 SNP sequence = CACTTTGGACACTAAATGCCC SNP = G/T SNP structure (UNICODE) = ACATTAATACKATGATCAGCT Parent 1 SNP sequence = ACATTAATACGATGATCAGCT Parent 2 SNP sequence = ACATTAATACTATGATCAGCT SNP structure (UNICODE) = CGAAATCACAKGATAGATGAA Parent 1 SNP sequence = CGAAATCACAGGATAGATGAA Parent 2 SNP sequence = CGAAATCACATGATAGATGAA
Probe for Locus	BaGS22K12
Locus	k07811
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative pyruvate dehydrogenase E1 beta subunit isoform 1 protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GCTGCTACACTTGCATAGGGA Right 5' - ACATCGCCGGAGAACTAGAA
Sequence	CA029367
PCR size	353