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GrainGenes Marker Report: k07837

Locus	k07837
Type	CAPS
Chromosome	3H
Map	Hv-HNxH602-3H 183.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS30I18
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = TaqI SNP = A/G SNP structure (UNICODE) = CAAAT-TTTCRATGAAAATAC Parent 1 SNP sequence = CAAATATTTCAATGAAAATAC Parent 2 SNP sequence = CAAAT-TTTCGATGAAAATAC Recognized sequence for CAPs locus = TCGA
Probe for Locus	BaGS30I18
Locus	k07837
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = 60S ribosomal protein L10A (RPL10aA) [Arabidopsis thaliana] sp Q8VZB9 R10A_ARATH 60S ribosomal protein L10a-1
Type	PCR
PCR primers	Left 5' - TCCCAGGTGTACAGGACAGA Right 5' - TCGGTGTGATAACCATGCTG
Sequence	BJ467977
PCR size	376