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GrainGenes Marker Report: k07933

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Locus	k07933
Type	SNP
Chromosome	4H
Map	Hv-HNxH602-4H 2.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS32P17
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 16 ] SNP = C/A SNP structure (UNICODE) = TGGAGTGGATMGACACCATCC Parent 1 SNP sequence = TGGAGTGGATCGACACCATCC Parent 2 SNP sequence = TGGAGTGGATAGACACCATCC SNP = G/C SNP structure (UNICODE) = GAGAACACAGSCATAGAACAC Parent 1 SNP sequence = GAGAACACAGGCATAGAACAC Parent 2 SNP sequence = GAGAACACAGCCATAGAACAC SNP = A/C SNP structure (UNICODE) = CCCTCTCCATMAGGTCCTTGA Parent 1 SNP sequence = CCCTCTCCATAAGGTCCTTGA Parent 2 SNP sequence = CCCTCTCCATCAGGTCCTTGA SNP = G/A SNP structure (UNICODE) = ACACCATCCTRATGAGCCCCC Parent 1 SNP sequence = ACACCATCCTGATGAGCCCCC Parent 2 SNP sequence = ACACCATCCTAATGAGCCCCC
Probe for Locus	BaGS32P17
Locus	k07933
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = 40S ribosomal protein S25 (RPS25B) [Arabidopsis thaliana] sp Q9SIK2 R25A_ARATH 40S ribosomal protein S25-1
Type	PCR
PCR primers	Left 5' - GCCTCGGCGATCCTATTTAT Right 5' - GGTGAAATGCTACGACCGAT
Sequence	BU994143
PCR size	207