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GrainGenes Marker Report: k07956

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Locus	k07956
Type	SNP
Chromosome	7H
Map	Hv-HNxH602-7H 196.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS20A13
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 16 ] SNP = T/G SNP structure (UNICODE) = TGTCTCCRATKGTCTTCTCTA Parent 1 SNP sequence = TGTCTCCAATTGTCTTCTCTA Parent 2 SNP sequence = TGTCTCCGATGGTCTTCTCTA SNP = C/G SNP structure (UNICODE) = GATAAACRTASTTGCATTTAT Parent 1 SNP sequence = GATAAACGTACTTGCATTTAT Parent 2 SNP sequence = GATAAACATAGTTGCATTTAT SNP = A/G SNP structure (UNICODE) = CACTGTCTCCRATKGTCTTCT Parent 1 SNP sequence = CACTGTCTCCAATTGTCTTCT Parent 2 SNP sequence = CACTGTCTCCGATGGTCTTCT SNP = G/A SNP structure (UNICODE) = AAAGATAAACRTASTTGCATT Parent 1 SNP sequence = AAAGATAAACGTACTTGCATT Parent 2 SNP sequence = AAAGATAAACATAGTTGCATT
Probe for Locus	BaGS20A13
Locus	k07956
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = cinnamoyl-CoA reductase family [Arabidopsis thaliana] pir E84747 probable cinnamoyl-CoA reductase [imported] - Arabidopsis thaliana
Type	PCR
PCR primers	Left 5' - AGTTCAGGGTTCAAAGGGGT Right 5' - GTCTGAAGAGGAAGCCGATG
Sequence	AV919125
PCR size	270