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GrainGenes Marker Report: k07966

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Locus	k07966
Type	CAPS
Chromosome	3H
Map	Hv-HNxH602-3H 292.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS7G14
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HapII SNP = T/G SNP structure (UNICODE) = TTTATGTGCCKGTAGCGGTTG Parent 1 SNP sequence = TTTATGTGCCTGTAGCGGTTG Parent 2 SNP sequence = TTTATGTGCCGGTAGCGGTTG Recognized sequence for CAPs locus = CCGG
Probe for Locus	BaGS7G14
Locus	k07966
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative Rab5-interacting protein - like [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - ATGGACCCAAGGATGTTTCA Right 5' - TTTGGGCGTTGTACAGAAGA
Sequence	AV919746
PCR size	265