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GrainGenes Marker Report: k08006

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Locus	k08006
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 118.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS1N17
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = G/A SNP structure (UNICODE) = ACACACACACRAAGAGAGAGA Parent 1 SNP sequence = ACACACACACGAAGAGAGAGA Parent 2 SNP sequence = ACACACACACAAAGAGAGAGA SNP = T/C SNP structure (UNICODE) = CTTTGTCAGAYGCAGCCACAG Parent 1 SNP sequence = CTTTGTCAGATGCAGCCACAG Parent 2 SNP sequence = CTTTGTCAGACGCAGCCACAG SNP = T/A SNP structure (UNICODE) = AGAGCTCACAWATCCATTTTC Parent 1 SNP sequence = AGAGCTCACATATCCATTTTC Parent 2 SNP sequence = AGAGCTCACAAATCCATTTTC
Probe for Locus	BaGS1N17
Locus	k08006
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = P0456F08.8 [Oryza sativa (japonica cultivar-group)] dbj BAB39408.1 P0456F08.8 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TAACACGTTATCAGCACGCTC Right 5' - GAGGAACTTAGCCGAGGAGG
Sequence	AV921285
PCR size	250