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GrainGenes Marker Report: k08045

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Locus
k08045
Type
SNP
Chromosome
1H
Map
Hv-HNxH602-1H144.7
[ Show Nearby Loci ]
Map Data
Barley, HN x H602, Sato2009
Species
Hordeum vulgare
Hordeum vulgare subsp. spontaneum
Probe
BaGS39L14
Reference
ReferenceSato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark
[ Hide all but 1 of 23 ]
SNP = A/G
SNP structure (UNICODE) = CCCCTGCGTGRTCACCGTGTC
Parent 1 SNP sequence = CCCCTGCGTGATCACCGTGTC
Parent 2 SNP sequence = CCCCTGCGTGGTCACCGTGTC
SNP = A/C
SNP structure (UNICODE) = TCAATATTTGMAGGTGCTTGA
Parent 1 SNP sequence = TCAATATTTGAAGGTGCTTGA
Parent 2 SNP sequence = TCAATATTTGCAGGTGCTTGA
SNP = A/T
SNP structure (UNICODE) = TGGATCTACCWTCAATATTTG
Parent 1 SNP sequence = TGGATCTACCATCAATATTTG
Parent 2 SNP sequence = TGGATCTACCTTCAATATTTG
SNP = G/A
SNP structure (UNICODE) = AATAAGTTGARAGACTGGATC
Parent 1 SNP sequence = AATAAGTTGAGAGACTGGATC
Parent 2 SNP sequence = AATAAGTTGAAAGACTGGATC
SNP = C/T
SNP structure (UNICODE) = CGTGCATGTTYGCCTGCACAG
Parent 1 SNP sequence = CGTGCATGTTCGCCTGCACAG
Parent 2 SNP sequence = CGTGCATGTTTGCCTGCACAG
SNP structure (UNICODE) = GTTTGCAAACRAAAAGAAGCT
Parent 1 SNP sequence = GTTTGCAAACAAAAAGAAGCT
Parent 2 SNP sequence = GTTTGCAAACGAAAAGAAGCT


Probe for Locus
BaGS39L14
Locus
k08045
Reference
ReferenceSato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks
Best BLAST Hit = putative serine peptidase [Oryza sativa (japonica cultivar-group)] gb AAG13566.1 putative serine peptidase [Oryza sativa (japonica cultivar
Type
PCR
PCR primers
Left 5' - TCTCCAGAGGTTCTGATTTGG
Right 5' - CGCAGATCACCAAGACGATA
Sequence
BJ468657
PCR size
288