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GrainGenes Marker Report: k08117

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Locus	k08117
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 0
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS20L10
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = C/A SNP structure (UNICODE) = CGCGACAAACMGCGGAGCACA Parent 1 SNP sequence = CGCGACAAACCGCGGAGCACA Parent 2 SNP sequence = CGCGACAAACAGCGGAGCACA SNP = C/T SNP structure (UNICODE) = CTACCGATGAYCAACCGAGTG Parent 1 SNP sequence = CTACCGATGACCAACCGAGTG Parent 2 SNP sequence = CTACCGATGATCAACCGAGTG
Probe for Locus	BaGS20L10
Locus	k08117
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = VHS domain-containing protein / GAT domain-containing protein [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - ATGCATCTCTCATGGAAGGG Right 5' - TCAAGTCAACTCCAGCTTCG
Sequence	AV918337
PCR size	370