Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k08119

[Submit comment/correction]

Locus	k08119
Type	CAPS
Chromosome	4H
Map	Hv-HNxH602-4H 176.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS9H13
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = TaqI SNP = G/C SNP structure (UNICODE) = ATACTCTGGTSGAACTGGAGG Parent 1 SNP sequence = ATACTCTGGTGGAACTGGAGG Parent 2 SNP sequence = ATACTCTGGTCGAACTGGAGG Recognized sequence for CAPs locus = TCGA
Probe for Locus	BaGS9H13
Locus	k08119
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Type	PCR
PCR primers	Left 5' - AAGTGCCCAACACTGGAAAG Right 5' - AGCACTAGTCGCTCTCCTCG
Sequence	AJ465190
PCR size	371