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GrainGenes Marker Report: k08124

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Locus	k08124
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 223.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS21P09
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = A/G SNP structure (UNICODE) = TAAATCAAGCRGACGAGGCTC Parent 1 SNP sequence = TAAATCAAGCAGACGAGGCTC Parent 2 SNP sequence = TAAATCAAGCGGACGAGGCTC SNP = G/C SNP structure (UNICODE) = CGGCAGCCCASATGTACTCAT Parent 1 SNP sequence = CGGCAGCCCAGATGTACTCAT Parent 2 SNP sequence = CGGCAGCCCACATGTACTCAT SNP = G/T SNP structure (UNICODE) = ATCAGATTCAKGAACAGGTTG Parent 1 SNP sequence = ATCAGATTCAGGAACAGGTTG Parent 2 SNP sequence = ATCAGATTCATGAACAGGTTG
Probe for Locus	BaGS21P09
Locus	k08124
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative receptor-associated protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - AGAGTGCCAGTGCGTATGTG Right 5' - ATTTGGAGCCTGTGACCTTG
Sequence	AV918707
PCR size	375