Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k08125

[Submit comment/correction]

Locus	k08125
Type	CAPS
Chromosome	3H
Map	Hv-HNxH602-3H 103.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS36B01
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = BstUI SNP = A/G SNP structure (UNICODE) = AAAACGATTCRCGGTTCAGCT Parent 1 SNP sequence = AAAACGATTCACGGTTCAGCT Parent 2 SNP sequence = AAAACGATTCGCGGTTCAGCT Recognized sequence for CAPs locus = CGCG
Probe for Locus	BaGS36B01
Locus	k08125
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative auxin-induced protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TCACTCTTCGCAGTCTTGGA Right 5' - TTTTGCAAGTGCTCTTGTGC
Sequence	BJ467110
PCR size	367