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GrainGenes Marker Report: k08149

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Locus	k08149
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 116.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS37L19
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 16 ] SNP = A/G SNP structure (UNICODE) = AGTAAAATGARTGAATTTACG Parent 1 SNP sequence = AGTAAAATGAATGAATTTACG Parent 2 SNP sequence = AGTAAAATGAGTGAATTTACG SNP = T/G SNP structure (UNICODE) = GGGAAGTGATKTCTAGGCGCC Parent 1 SNP sequence = GGGAAGTGATTTCTAGGCGCC Parent 2 SNP sequence = GGGAAGTGATGTCTAGGCGCC SNP = A/T SNP structure (UNICODE) = GCTAGTTCTTWAAGAAAATCA Parent 1 SNP sequence = GCTAGTTCTTAAAGAAAATCA Parent 2 SNP sequence = GCTAGTTCTTTAAGAAAATCA SNP = C/T SNP structure (UNICODE) = TCAAGCATTGYGATGCATGTT Parent 1 SNP sequence = TCAAGCATTGCGATGCATGTT Parent 2 SNP sequence = TCAAGCATTGTGATGCATGTT
Probe for Locus	BaGS37L19
Locus	k08149
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative FH protein interacting protein FIP1 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - ACATCTTCGTGATCTCGGCT Right 5' - CCACACTTTCCTCTGCCTTC
Sequence	BJ468227
PCR size	367