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GrainGenes Marker Report: k08155

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Locus	k08155
Type	CAPS
Chromosome	7H
Map	Hv-HNxH602-7H 185.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS22I18
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = DdeI SNP = C/G SNP structure (UNICODE) = CCAATTTATASTCAGCCATTC Parent 1 SNP sequence = CCAATTTATACTCAGCCATTC Parent 2 SNP sequence = CCAATTTATAGTCAGCCATTC Recognized sequence for CAPs locus = CTNAG
Probe for Locus	BaGS22I18
Locus	k08155
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = calcium-binding EF hand family protein [Arabidopsis thaliana] pir T05057 hypothetical protein M3E9.100 - Arabidopsis thaliana
Type	PCR
PCR primers	Left 5' - ACACGCACCGGCTAAATATC Right 5' - CTCAGTGGAGGGACAACCAT
Sequence	AV918872
PCR size	372