GrainGenes Marker Report: k08164
Locus
k08164
Type
CAPS
Chromosome
2H
Map
Hv-HNxH602-2H 138.3
[ Show Nearby Loci ]
Map Data
Barley, HN x H602, Sato2009
Species
Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe
BaGS5K11
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark
[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = DdeI SNP = C/T SNP structure (UNICODE) = TCTAGGCCGCYAAGCTCACGA Parent 1 SNP sequence = TCTAGGCCGCCAAGCTCACGA Parent 2 SNP sequence = TCTAGGCCGCTAAGCTCACGA Recognized sequence for CAPs locus = CTNAG
Probe for Locus
BaGS5K11
Locus
k08164
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks
Best BLAST Hit = anion-transporting ATPase family protein [Arabidopsis thaliana]
Type
PCR
PCR primers
Left 5' - ATATGACCCACAGTAGCGGG
Right 5' - ATAGTGCGTTTATGGCCTCG
Sequence
AV919345
PCR size
369
GrainGenes Marker Report: k08164
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