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GrainGenes Marker Report: k08176

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Locus	k08176
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 110
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS14N10
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 11 ] SNP = G/A SNP structure (UNICODE) = GCCTGGGCCARCGGACGATGA Parent 1 SNP sequence = GCCTGGGCCAGCGGACGATGA Parent 2 SNP sequence = GCCTGGGCCAACGGACGATGA SNP = C/T SNP structure (UNICODE) = CAGCAGGTGAYTTCGGGGACT Parent 1 SNP sequence = CAGCAGGTGACTTCGGGGACT Parent 2 SNP sequence = CAGCAGGTGATTTCGGGGACT SNP structure (UNICODE) = GGCCACATTAYTCTTGGTGGC Parent 1 SNP sequence = GGCCACATTACTCTTGGTGGC Parent 2 SNP sequence = GGCCACATTATTCTTGGTGGC
Probe for Locus	BaGS14N10
Locus	k08176
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = P0519D04.18 [Oryza sativa (japonica cultivar-group)] dbj BAB85359.1 P0519D04.18 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - ACAGCGTGGGTACAAACACA Right 5' - GGCCTGATGTTTCCACAGTT
Sequence	AV920606
PCR size	370