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GrainGenes Marker Report: k08177

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Locus	k08177
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 125.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS31G22
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = A/G SNP structure (UNICODE) = AGAAAGAGACRTGACAAATCA Parent 1 SNP sequence = AGAAAGAGACATGACAAATCA Parent 2 SNP sequence = AGAAAGAGACGTGACAAATCA SNP = T/C SNP structure (UNICODE) = ACGCTGATGGYGAATCCGGAC Parent 1 SNP sequence = ACGCTGATGGTGAATCCGGAC Parent 2 SNP sequence = ACGCTGATGGCGAATCCGGAC
Probe for Locus	BaGS31G22
Locus	k08177
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = probable peptidylprolyl isomerase (EC 5.2.1.8) FKBP77 - wheat emb CAA68913.1 peptidylprolyl isomerase [Triticum aestivum]
Type	PCR
PCR primers	Left 5' - CAGCCTAATTTGAGCACCGT Right 5' - TGTACCCGCCAATAACCTTC
Sequence	BJ467632
PCR size	370