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GrainGenes Marker Report: k08199

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Locus	k08199
Type	SNP
Chromosome	6H
Map	Hv-HNxH602-6H 52.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS30E05
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 26 ] SNP = A/G SNP structure (UNICODE) = ACTGTGTACTRCATTGTTTCT Parent 1 SNP sequence = ACTGTGTACTACATTGTTTCT Parent 2 SNP sequence = ACTGTGTACTGCATTGTTTCT SNP = G/A SNP structure (UNICODE) = CTTGCACACTRCAAAGAACTG Parent 1 SNP sequence = CTTGCACACTGCAAAGAACTG Parent 2 SNP sequence = CTTGCACACTACAAAGAACTG SNP = G/T SNP structure (UNICODE) = AGCCATTACTKTAAACTCACC Parent 1 SNP sequence = AGCCATTACTGTAAACTCACC Parent 2 SNP sequence = AGCCATTACTTTAAACTCACC SNP structure (UNICODE) = GTCGAACAAGRCTGGGCCGTC Parent 1 SNP sequence = GTCGAACAAGACTGGGCCGTC Parent 2 SNP sequence = GTCGAACAAGGCTGGGCCGTC SNP = G/C SNP structure (UNICODE) = ACTTCCCTCCSGTAAGATAAA Parent 1 SNP sequence = ACTTCCCTCCGGTAAGATAAA Parent 2 SNP sequence = ACTTCCCTCCCGTAAGATAAA SNP structure (UNICODE) = CATGGATGAGRACTTGCACAC Parent 1 SNP sequence = CATGGATGAGAACTTGCACAC Parent 2 SNP sequence = CATGGATGAGGACTTGCACAC SNP = T/C SNP structure (UNICODE) = GGCAAATGTGYCTGACAGCCA Parent 1 SNP sequence = GGCAAATGTGTCTGACAGCCA Parent 2 SNP sequence = GGCAAATGTGCCTGACAGCCA
Probe for Locus	BaGS30E05
Locus	k08199
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = CTP synthase [Mycobacterium leprae] sp P53529 PYRG_MYCLE CTP synthase (UTP--ammonia ligase) (CTP synthetase)
Type	PCR
PCR primers	Left 5' - ATCTCGTTCTTGGAGCCGTA Right 5' - ACCACAAGCATTGGAGAAGG
Sequence	BJ467903
PCR size	369