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GrainGenes Marker Report: k08200

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Locus	k08200
Type	CAPS
Chromosome	7H
Map	Hv-HNxH602-7H 246.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS1I05
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = XspI SNP = C/G SNP structure (UNICODE) = ACAGAGACTASGGCATCACTG Parent 1 SNP sequence = ACAGAGACTACGGCATCACTG Parent 2 SNP sequence = ACAGAGACTAGGGCATCACTG Recognized sequence for CAPs locus = CTAG
Probe for Locus	BaGS1I05
Locus	k08200
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative protein [Arabidopsis thaliana] gb AAO00953.1 putative protein [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - GCAATTCGCTTCTTTCTTGC Right 5' - TGACACTGCCTCTCAACCTG
Sequence	AV921229
PCR size	370