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GrainGenes Marker Report: k08204

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Locus	k08204
Type	SNP
Chromosome	1H
Map	Hv-HNxH602-1H 202.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS22A21
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 22 ] SNP = C/T SNP structure (UNICODE) = ACATATCGCAYATATCTGAGC Parent 1 SNP sequence = ACATATCGCACATATCTGAGC Parent 2 SNP sequence = ACATATCGCATATATCTGAGC SNP = A/G SNP structure (UNICODE) = GGCAACCATCRTTAGGCACAA Parent 1 SNP sequence = GGCAACCATCATTAGGCACAA Parent 2 SNP sequence = GGCAACCATCGTTAGGCACAA SNP = G/A SNP structure (UNICODE) = CAAAGGCAGCRATCTTCTTCC Parent 1 SNP sequence = CAAAGGCAGCGATCTTCTTCC Parent 2 SNP sequence = CAAAGGCAGCAATCTTCTTCC SNP structure (UNICODE) = TCTTCTTCCCRTTCTTCACCA Parent 1 SNP sequence = TCTTCTTCCCATTCTTCACCA Parent 2 SNP sequence = TCTTCTTCCCGTTCTTCACCA SNP structure (UNICODE) = ACTTCAGGTTRTATAGGACAT Parent 1 SNP sequence = ACTTCAGGTTGTATAGGACAT Parent 2 SNP sequence = ACTTCAGGTTATATAGGACAT SNP = C/G SNP structure (UNICODE) = CCTTAACAGTSCATTCCATCC Parent 1 SNP sequence = CCTTAACAGTCCATTCCATCC Parent 2 SNP sequence = CCTTAACAGTGCATTCCATCC
Probe for Locus	BaGS22A21
Locus	k08204
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = 40S ribosomal protein S23 [Oryza sativa (japonica cultivar-group)] ref NP_915363.1 40S ribosomal protein S23 [Oryza sativa (japonica cultiv
Type	PCR
PCR primers	Left 5' - GCAACAGGTTTGAACCAACA Right 5' - AGCGACAGAAGGAGTTCGAC
Sequence	AV918733
PCR size	373