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GrainGenes Marker Report: k08227

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Locus	k08227
Type	SNP
Chromosome	7H
Map	Hv-HNxH602-7H 283.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS32I12
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 11 ] SNP = C/T SNP structure (UNICODE) = CCTTGGCCGCYGCAGATGCGT Parent 1 SNP sequence = CCTTGGCCGCCGCAGATGCGT Parent 2 SNP sequence = CCTTGGCCGCTGCAGATGCGT SNP structure (UNICODE) = CACAGCCATCYTATGGCATGT Parent 1 SNP sequence = CACAGCCATCCTATGGCATGT Parent 2 SNP sequence = CACAGCCATCTTATGGCATGT SNP = T/C SNP structure (UNICODE) = CCGAGCAAACYACATTTTGCT Parent 1 SNP sequence = CCGAGCAAACTACATTTTGCT Parent 2 SNP sequence = CCGAGCAAACCACATTTTGCT
Probe for Locus	BaGS32I12
Locus	k08227
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = unknown protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GCCAGCCACAAGATAAGACC Right 5' - TGGCGAGTTGTAGGAGAAGG
Sequence	BJ466512
PCR size	413