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GrainGenes Marker Report: k08264

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Locus	k08264
Type	CAPS
Chromosome	6H
Map	Hv-HNxH602-6H 102.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS34D11
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = MflI SNP = G/T SNP structure (UNICODE) = CTATCTGCCAKATCCTGTCAC Parent 1 SNP sequence = CTATCTGCCAGATCCTGTCAC Parent 2 SNP sequence = CTATCTGCCATATCCTGTCAC Recognized sequence for CAPs locus = RGATCY
Probe for Locus	BaGS34D11
Locus	k08264
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative fatty acid elongase [Zea mays]
Type	PCR
PCR primers	Left 5' - AATACGGAGGGGAAACGAAG Right 5' - ACCTCCCCAGCTCAACTACC
Sequence	BJ464413
PCR size	418