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GrainGenes Marker Report: k08268

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Locus	k08268
Type	CAPS
Chromosome	7H
Map	Hv-HNxH602-7H 132.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS15L12
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = AvaI SNP = C/T SNP structure (UNICODE) = ATCTCTTCCTYGGGAACCGCT Parent 1 SNP sequence = ATCTCTTCCTCGGGAACCGCT Parent 2 SNP sequence = ATCTCTTCCTTGGGAACCGCT Recognized sequence for CAPs locus = CYCGRG
Probe for Locus	BaGS15L12
Locus	k08268
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = DNAJ heat shock protein, putative [Arabidopsis thaliana] gb AAL67104.1 At1g24120/F3I6_4 [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - ATGGAAGCATACATGAGGGG Right 5' - CAGGAGCCAGGCTTATCAAT
Sequence	AV834365
PCR size	426