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GrainGenes Marker Report: k08278

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Locus	k08278
Type	CAPS
Chromosome	7H
Map	Hv-HNxH602-7H 269.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS7F20
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HinfI SNP = G/A SNP structure (UNICODE) = AGTCAATCACRATTCAAGGCG Parent 1 SNP sequence = AGTCAATCACGATTCAAGGCG Parent 2 SNP sequence = AGTCAATCACAATTCAAGGCG Recognized sequence for CAPs locus = GANTC
Probe for Locus	BaGS7F20
Locus	k08278
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative indole-3-glycerol phosphate synthase [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - AATTCAGGGCCTGTGTGAAC Right 5' - AAGGCACACGCTGAAGAACT
Sequence	AV919736
PCR size	422