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GrainGenes Marker Report: k08301

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Locus	k08301
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 231.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS9H19
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = T/A SNP structure (UNICODE) = ATTATCACTTWAGTGGATAGT Parent 1 SNP sequence = ATTATCACTTTAGTGGATAGT Parent 2 SNP sequence = ATTATCACTTAAGTGGATAGT SNP = A/T SNP structure (UNICODE) = ATAGTGAATGWATGCGCAAAG Parent 1 SNP sequence = ATAGTGAATGAATGCGCAAAG Parent 2 SNP sequence = ATAGTGAATGTATGCGCAAAG SNP = A/G SNP structure (UNICODE) = TGAGTGAGTTRCTGAGATAAA Parent 1 SNP sequence = TGAGTGAGTTACTGAGATAAA Parent 2 SNP sequence = TGAGTGAGTTGCTGAGATAAA
Probe for Locus	BaGS9H19
Locus	k08301
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative 40S ribosomal protein S15 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - AGTTCCGCCTTGCTCAACTA Right 5' - CGTAGAAGCCATTGTCAGCA
Sequence	BQ660588
PCR size	420