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GrainGenes Marker Report: k08302

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Locus	k08302
Type	CAPS
Chromosome	1H
Map	Hv-HNxH602-1H 33.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS11I03
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HapII SNP = G/A SNP structure (UNICODE) = GGGCGACCCGRTATGAACAAC Parent 1 SNP sequence = GGGCGACCCGGTATGAACAAC Parent 2 SNP sequence = GGGCGACCCGATATGAACAAC Recognized sequence for CAPs locus = CCGG
Probe for Locus	BaGS11I03
Locus	k08302
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = peroxisomal membrane protein ABC transporter homologue [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GAAGACCATGTAGGGGACGA Right 5' - TGAAGGAAGGTGACGAGCTT
Sequence	AV917786
PCR size	423